Over the past few days, measured the piston skirt, measured the bore, clearance seems to be 3 to 4 thou. Cleaned the piston with emery paper and then Solvol. Washed thoroughly with water. Then it occurred to me that if there was any oily deposits in any passages in the piston, they might be contaminated with abrasives so washed it again, this time in petrol. There are still grooves visible on the rear skirt but no high points.
Honed the bore again. The rubbed marks also still visible, but with cross-hatched honing marks laid over them.
Back together, generous with the oil, cut a fresh base gasket, new Cometic composite head gasket from Hitchcocks - the sole spending on this rebuild. All torqued down again.
While I was at it, spent half a day messing with the tank mounts. So yesterday, the tank was on, it was off, it was on again, the mounting holes were, uhm, eased with a rat's tail file. The nose portion of the tank was also eased - used a long bolt through the front mounting holes, two nuts between the mounts, wound them apart to open up that part of the tank. Probably about 2-3 mm? The tank has been binding on the frame rubber grommet, adding still more to the frustration of the holes not lining up, and also the narrow front constricts the cables and wiring in that area. All in all, not perfect but the tank is considerably easier to put on & take off.
Today, started it up, ran for about two-three minutes, sounded fine, apart from a slight clatter from the tappets - loosened the exhaust one a bit when I had a doubt that the exhaust valve was closing properly. Checked the oil pipes to the head - they are receiving oil.
Left it half-an-hour, started it again, ran it two-three minutes, gave a couple gentle bursts of throttle. Shut it down again.
Later, ran the bike up through the village to the car park and back home. Off and left it an hour, then repeated. Enough for day one.
Now I have to walk that line. Don't want to demand too much from a newly-rebuilt engine, but don't want to run it in so gently the rings never bed in and the barrel ends up polished.
Play it by ear, literally.