I appreciate your input on the XVS650 trans issue.
Although the inside of the center fork does look galled, I think the rough appearance may actually be the original, unmachined surface. Compare the surface of the Center Fork to the similar inside surfaces of the Right and Left forks in the first picture. They are all rough and grooved. Also there outer circumference of the slot in the sliding 3rd Pinion is quite smooth .
When I tap the 4th pinion to the position it wants to be in for ratios 1rst - 3rd, and assemble the Center Fork and Shifter Drum with the Input Shaft assy, as shown in the 2nd picture, the Input Shaft spins nicely and freely, and the Fork floats nicely in the gear's slot. I'd estimate about .015 - .020 of lateral motion in the Fork around the circumference of the slot. The Center Fork doesn't appear to be bent, or worn, except for some wear on the surface facing towards the 4th Pinion. This is best seen in the 3rd image. I'm not sure if what I'm looking at is scoring in the metal, or just wear in the carbon coating on the surface.
The channel in the Shifter Drum looks excellent, as does the Button on the Center Fork that rides in it. There's no visible damage to either.
Placed on the polished piece of granite that passes as a surface plate in my basement shop, the tubular Rail that the Center Fork rides on looks very straight. My thinnest (.05 mm = .002") feeler gauge can't get in at any point, at any rotation of the Rail, and light barely peaks through. I'd estimate less than .0005" of crooked, which seems pretty good to me.
I disassembled the Output shaft, and I see that Yamaha puts pinholes under the free rotating gears, and fits them with bronze bushings, but there were no pinholes under the sliding gears. It did not appear that #3 output gear's oil supply hole was plugged, which would have been a nice conclusive discovery. I assume that the oil leaks out of the journal under the free rotating gears, runs out radially along the gear, and lubricates the mating sliding gear that way.
At this point, I'm psyched to follow through the process of fixing what I have. I know I'll get 100 times more satisfaction with the repair than just replacing the guts with purchased take-out parts, so even if it's more expensive as well as more time consuming, I want to take the more educational route. The bearing splitter I ordered should be waiting for me when I get home this evening.
I'm leaning towards disassembly of the Input Shaft, and cleaning the 3rd pinion of carbon. I'll fit and stone as needed with the Machinist's Blue, and do the same with the Center Fork. What do you think?
More background on the situation, as it was related to me:
The original owner of the bought the bike new, but fathered a child about 2000 miles into ownership. His wife forbade him from riding, and the XVS650 spent many years waiting patiently for his return.
After a decade and a half, first owner sold the bike to my buddy, who started actively riding it.
I think that my friend told me he did NOT change the oil that came in the machine, he figured the bike has 2000 miles, oil change interval is 4000, I'll ride! My friend is not very "mechanically sympathetic", definitely more of a "if it ain't broke, don't fix it" character.
About 4500 miles later, he was riding with a group when the incident happened. They were riding, everything was copacetic. They stopped for fuel/piss break. They started riding and the bike refused to enter 4th, instead reaching a false neutral above 3rd.
My friend didn't force it, but there was no doubt some period of " repeatedly trying to get it to shift into 4th". (This could be relevant to "wear in carbon coating on surface of fork")
My buddy changed the oil, (Finally??!!!) ... no change in characteristic.
My buddy pulled off the right side cover and clutch, chasing a possible shifter issue. He consulted me. I told him to pull the engine, take it down. He did not do this, instead started talking about magic "fix it fluid" infusions.
Another 9 months of sitting in his garage and he had enough. Swapped it to me, plus some cash, for a well running Honda VT600. Since the engine was already started towards disassembly, I didn't ride it, didn't run it, ... just took his word at face value. I got it cheap enough to buy a takeout engine and break even.