Stingray -- your profile and picture provide a much better understanding of your context and approach.
I'm baffled by those basing a 100mph motorcycle on the single-downtube, stressed-member 500cc UCE chassis, especially when they have the much superior 535cc UCE chassis available. On the other hand, my track car is a 1989 Mustang GT.
With the extensive fork and swingarm changes you're making I think we should focus on both front and rear geometry so send measurements for the experts consideration.
Did you have Hagon build the shock to your weight and intended use? If so, what is the resulting configuration (eg, spring rate, etc)?
You have a strong swingarm but the stock plastic bushings remain a weak point. Install metalastic bushings or something better.
What tires and pressures are you planning on using? Bigger is not always better, especially for stability on a motorcycle.
With your excellent RACE-ONLY battery, remove the kickstarter lever for weight and aesthetic reasons. Upgrade both positive and negative battery and starter cables to minimum 12AWG stranded and install a fused Honda starter relay with exposed terminals. Depending on compression ratio, you might need to upgrade your sprag clutch with the latest caged bearing. In any event, you need to Loctite the crankshaft bolt.
Experiences vary on the need for clutch spring and plate upgrades. I suspect there are oil type and additive interactions.
Replacing the front and rear engine-to-frame brackets with aluminum will save maybe 5-8 lbs so are a worthwhile weight reduction. Whether or not you do this, double-up on the head stay. You need to have that big single firmly held in a triangle.
I hope you are living with your parents and have a rich girlfriend. That's a lovely motorcycle but I recognize a money pit when I see one.
Ask my bank.
Keep the pictures coming.