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So I ran some cheap wire from the battery to the ammeter terminals. Cheap wire may be the reason for what happened next, I don't know. The connection just fried the wires. But, when the connection was made, the ammeter readout jumped into the green. What didn't happen was the ammeter backlight turning on, nor did the ignition work.
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You didn't say if the ignition switch was off or on when you connected your "cheap" jumper wire and that could have a lot to do with the wire "frying".
With the ignition switch OFF, the jumper wire would not be carrying and current so, if the wire fried under that condition, there is a short to ground somewhere in the harness.
If the ignition switch was ON when you connected the jumper, the ECU, headlight, parking lights and tail light would be powered thru the jumper.
If the jumper was a very small guage wire like speaker wire, it would probably be overloaded and fry.
If the jumper was a 10, 12, 14 or maybe even a 16 guage wire, it should not have overheated and your lights should have come on.
I don't know how well we can trust that wiring diagram but it shows the two wires going to the ECU (TCI) with the fuse in them are brown.
The two wires going into the MAIN fuse are red.
The two wires in the picture on the previous page look like they are brown.
Looking at that picture I see a large lump of plastic electrical tape on the large, red + wire that is attached to the battery.
That lump may be covering the elusive, missing main fuse. Unwrap it.
It is at this location that the small red wire should connect to the main red power supply wire so I suspect you will find something interesting under that tape.
The fact that your ammeter jumped into the green may have more to do with which of the two terminals you attached the jumper wire to but IMO, if you connected the wire to the IGN side of the meter it should not have registered any reading at all.
If you connected the jumper to the POWER IN side of the amp meter with the ignition switch ON it should have jumped towards the red "discharge" side of the meter.