The instructions in the manual will ALWAYS work. They are kept simple so as not to confuse the people who need someone to read the instructions to them.
Arguably, there are other ways. Most of them are not as good as you would like to think. I base this on over 40 years in the industry observing the various "improvements" my customers come up with.
A very experienced rider could probably carefully monitor engine response as he uses his one and only best way to precisely break it in to his specs. Or, he could give it over to an experienced dyno operator for a controlled machine monitored break in.
Again, in my experience, most of these riders are not as good as they think they are. People go out of their way to reason out the best way without the knowledge to come up with a way that is better than the stock procedure, which ALWAYS works.
I do get worked up over this. Over the years I've had too many customers destroy brand new bikes and rebuilt motors because their buddy told them the "right" way to break it in. If you are happy with the way things turn out for you, then great. But even if you are right, the person you are "educating" may not grasp everything you are telling them. Their results won't necessarily match yours. To avoid these issues, all they have to do is follow the manufacturer's instruction.
That ALWAYS works.